Table 1 HIV-1 protein sequences used in this study
Sequences* | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GENE | Total | A-A1 | B | C | D | F1 | F2 | G | H | K | O | 01 | 02 | 04 | 06 | 10 | 11 | 12 | CPZ |
GAG | 207 | 10 | 37 | 28 | 5 | 7 | 2 | 4 | 3 | 3 | 5 | 14 | 8 | 3 | 4 | 3 | 4 | 3 | 5 |
POL | 204 | 11 | 34 | 26 | 5 | 4 | 3 | 4 | 3 | 2 | 5 | 14 | 12 | 3 | 4 | 3 | 5 | 3 | 5 |
ENV | 408 | 24 | 128 | 51 | 17 | 5 | 5 | 9 | 3 | 2 | 10 | 33 | 16 | 3 | 5 | 3 | 6 | 3 | 5 |
VIF | 427 | 28 | 190 | 40 | 13 | 5 | 5 | 5 | 3 | 2 | 24 | 15 | 12 | 3 | 4 | 3 | 4 | 12 | 5 |
TAT | 219 | 11 | 39 | 29 | 7 | 6 | 3 | 4 | 3 | 2 | 4 | 14 | 14 | 3 | 6 | 3 | 4 | 3 | 5 |
REV | 231 | 13 | 39 | 38 | 10 | 6 | 3 | 4 | 3 | 2 | 4 | 17 | 12 | 3 | 4 | 3 | 4 | 3 | 5 |
VPU/VPX | 333 | 14 | 87 | 50 | 18 | 6 | 3 | 6 | 3 | 2 | 15 | 25 | 14 | 3 | 4 | 3 | 4 | 3 | 5 |
VPR | 368 | 9 | 142 | 44 | 7 | 4 | 3 | 5 | 3 | 2 | 25 | 16 | 12 | 3 | 4 | 3 | 4 | 3 | 5 |
NEF | 449 | 12 | 282 | 44 | 4 | 4 | 3 | 7 | 5 | 2 | 4 | 31 | 12 | 3 | 4 | 3 | 11 | 3 | 4 |